Hi james.h.meyers!
If the shrimp at a single reef come in all genetic forms, despite interbreeding, then that means that interbreeding does not make shrimp genetically indistinguishable, and eliminates the paradox.
Stimulus uses word "substantial" in regard to the extent of genetic differences between populations.
"B" just says that individual shrimp within a given population differ from one another genetically. How much do they differ we can not know from "B". Maybe it is just few of billions genes that differ from one individual shrimp to other.
We can't assume that the extent of variations WITHIN given population at any given Indonesian coral reef is the same with extent of variations BETWEEN populations.
There is a possible world where "B" can help to explain discrepancy, but in order to get there we need to make some assumptions that are not supported by AC.
On the other hand look at "C"! Argument says that ocean currents would ALLOW the population to interbreed. "C" says that shrimp don't use this opportunity and effect of currents is negated by shrimp behavior.